Using coralligenous habitats to develop water quality indicators for the Mediterranean Sea (NIGESCOR)

Project ID Card
Using coralligenous habitats to develop water quality indicators for the Mediterranean Sea (NIGESCOR)
Acronym 
NIGESCOR
Project Call 
2014
Project Dates 
Oct 2014 - Nov 2018
Relevant OT-MED work packages  
WP2
Project leader 
Anne Chenuil
Participants or laboratories 

Aurélien De Jode (IMBE, OT-Med PhD)
Anne Chenuil (IMBE)
Contribution by Bertrand Millet (MIO)

Context & Objectives  

The coralligenous environment is a typical Mediterranean marine habitat and hosts the highest concentration of marine biodiversity in the Med. Paradoxically, unlike Posidonia meadows, it is poorly studied. Like the famous tropical coral reefs, it is a complex biogenic habitat, based on encrusting red algae (numerous metazoan phyla also participate to bio-construction). This project focuses on understanding its functioning and resilience capacity, and on establishing biodiversity and local and ecological connectivity patterns, on providing information for rationalizing the design of Marine Protected Area networks and on monitoring methods.

The project relies on interdisciplinarity, combining population genetics, community ecology, microbial ecology and physical oceanography. Its tests hypotheses related to the niche and neutral biodiversity theories that include both inter- and intra-specific levels of biodiversity. The societal interest relies on the setup of innovative, cost-effective and accurate methods for biodiversity characterization and monitoring, based on genetic tools rigorously inter-calibrated with traditional taxonomy and photo-quadrate approaches. This requests four tasks, partly using the same data, but different analysis methods:

1- Establishing the taxonomic composition of the engineer corallinale algae.

2- Establishing the species composition for numerous small quadrates of coralligenous using meta-barcoding in different ecological profiles.

3- Population structure and phylogeography of two selected taxa: a red alga Lithophyllum spp. and a bryozoan Myriapora truncata,

4- Comparing intra-specific diversity among species (determine site-effects vs species-effects); species assemblages ; intra- and inter-specific diversity (including microbial); how these coralligenous data support niche vs neutral biodiversity theories;

5 - Proposing new GES indicators (good environmental status) for the coralligenous and biodiversity management rules.

Main Results 

This project produced maps of the genetic delimitation and geographic distribution of 2 engineer species of coralligenous habitats in the Bay of Marseille for Lithophyllum (calcareous red algae) and Myriapora truncata (bryozoan), both non-model species. Intermediate results are:

  • Genetic delimitation of Lithophyllum and their distribution along the Bay of Marseille: these species have different ecological niche relative to depth and each has a strong spatial genetic structure; both results increase expected vulnerability to environmental change.
  • Development and application of a metabarcoding protocol to describe coralligenous communities and application: strong influence of depth, orientation and locality of species composition (even relative to animal species)
  • Fine scale population genomics of one of the six cryptic species of Lithophyllum identified.

Correlations between species diversity obtained from metabarcoding and genetic diversity using population genomics.

Ecological segregations for depth and irradiance (depth: D1= 28-30m, D2: 45 m) of the different cryptic species within Lithophyllum stictaeforme / cabiochae, the engineer species builder of coralligenous reefs. Each clade represents a separate biological species

Publications
De Jode, A., David, R., Haguenauer, A., Cahill, A. E., Erga, Z., Guillemain, D., ... & Féral, J. P. (2019). From seascape ecology to population genomics and back. Spatial and ecological differentiation among cryptic species of the red algae Lithophyllum stictiforme/L. cabiochiae, main bioconstructors of coralligenous habitats. Molecular phylogenetics and evolution, 137, 104-113.
David, R., Uyarra, M. C., Carvalho, S., Anlauf, H., Borja, A., Cahill, A. E., ... & Guillemain, D. (2019). Lessons from photo analyses of Autonomous Reef Monitoring Structures as tools to detect (bio-) geographical, spatial, and environmental effects. Marine pollution bulletin, 141, 420-429.
Cahill AE, De Jode A, Dubois S, Bouzaza Z, Aurelle A, Boissin E, Chabrol O, David R, Egea E, Ledoux J-B, Mérigot B, Weber A A-T & Chenuil A. 2017. A multispecies approach reveals hot-spots and cold-spots of diversity and connectivity in invertebrate species with contrasting dispersal modes. Molecular Ecology 26 : 6563-6577